It seems that Magento 2 uses the paypal payflo gateway to handle paypal pro payments whereas 1.9 just communicates directly with paypal pro.
I'm just wondering since I'm not really used to the payflo gateway or manager interface. I really liked the integration that 1.9 had... 2.1 has caused me a lot of grief.
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I dont have an answer myself, but im interested to see what the outcome is on this. Can you update when you have more info please?
Well, I found a post a bit ago,
Pretty much answers it I guess, bummer that it isn't supported.