Hi Alex,
In this case, you can disable the products in different way. Follow the steps below-
• Select the products that you want to disable/remove from the particular store from the product grid.
• Click on the Action control displayed right above the product grid and tap the Update Attributes option.
• On tapping that option, Magento will list down all the Attributes to make any changes in bulk for all of that selected product. But, to disable the products, you should click on the last option from the right-hand side block. It will exhibit the page where you can enable/disable the products for stores as well as websites (if you have established Multi-websites).
Perform these steps and check it on the storefront too. If asked, do the cache management and re-indexing too.
Hope it helps!