Please find the below code to solve configurable product with associated individual product problem
Mage::app()->setCurrentStore(Mage_Core_Model_App::ADMIN_STORE_ID);
$productArr = [];
$tmpFilename = $_FILES["docname"]["tmp_name"];
$csv = new Varien_File_Csv();
$data = $csv->getData($tmpFilename);
$skuArr = array();
foreach ($data as $value) {
$skuArr[] = $value[0];
$attributeColorCode = 'color';
$attributeSizeCode = 'size';
// return function to getting the attribute color id
$attribute_details = Mage::getSingleton("eav/config")->getAttribute('catalog_product', $attributeColorCode);
$attribute = $attribute_details->getData();
$attribute_colorid = $attribute['attribute_id'];
// return function to getting the attribute size id
$attribute_details = Mage::getSingleton("eav/config")->getAttribute('catalog_product', $attributeSizeCode);
$attribute = $attribute_details->getData();
$attribute_sizeid = $attribute['attribute_id'];
$optionColorId = Mage::helper('bulkupload')->getOptionId($attributeColorCode,$value[15]);
$optionSizeId = Mage::helper('bulkupload')->getOptionId($attributeSizeCode,$value[16]);
$cat = Mage::helper('bulkupload')->getCategoryNameById($value[3]);
if($value[1]=='simple'){
$simpleProduct = Mage::getModel('catalog/product');
try {
$simpleProduct
->setWebsiteIds(array(1)) //website ID the product is assigned to, as an array
->setAttributeSetId($value[17]) //ID of a attribute set named 'default'
->setTypeId($value[1]) //product type
->setCreatedAt(strtotime('now')) //product creation time
->setSku($value[0]) //SKU
->setName($value[2]) //product name
->setWeight($value[6])
->setStatus(1) //product status (1 - enabled, 2 - disabled)
->setTaxClassId(0) //tax class (0 - none, 1 - default, 2 - taxable, 4 - shipping)
->setVisibility(1) //catalog and search visibility
->setColor($optionColorId)
->setSize($optionSizeId)
->setNewsFromDate('') //product set as new from
->setNewsToDate('') //product set as new to
->setPrice($value[7]) //price in form 11.22
->setSpecialPrice('') //special price in form 11.22
->setSpecialFromDate('') //special price from (MM-DD-YYYY)
->setSpecialToDate('') //special price to (MM-DD-YYYY)
->setMetaTitle($value[8])
->setMetaKeyword($value[10])
->setMetaDescription($value[9])
->setDescription($value[4])
->setShortDescription($value[5]);
if(!empty($value[14])){
$galleryData = explode(',',$value[14]);
$simpleProduct->setMediaGallery (array('images'=>array (), 'values'=>array ()));
foreach($galleryData as $gallery_img) {
if ($gallery_img){
$simpleProduct->addImageToMediaGallery($gallery_img, array ('image','small_image','thumbnail'), false, false);
}
else{
$err = 1;
Mage::getSingleton('core/session')->addError($this->__('Image Path of '.$value[0].' Not Exist !!!'));
}
}
}
$simpleProduct->setStockData(array(
'use_config_manage_stock' => 0, //'Use config settings' checkbox
'manage_stock' => 1, //manage stock
'min_sale_qty' => 1, //Minimum Qty Allowed in Shopping Cart
'max_sale_qty' => 2, //Maximum Qty Allowed in Shopping Cart
'is_in_stock' => 1, //Stock Availability
'qty' => $value[11] //qty
)
)
// $cat = $this->getCategoryNameById($value[3]);
->setCategoryIds($cat); //assign product to categories
$simpleProduct->save();
$productId = $simpleProduct->getId();
$simpleProductArr[] = $productId;
} catch (Exception $e) {
Mage::log($e->getMessage());
echo $e->getMessage();
}
}
/* Configurable Product Insert Section */
if(count($simpleProductArr)>0 && $value[1]=='configurable'){
$configProduct = Mage::getModel('catalog/product');
try {
$configProduct
// ->setStoreId(1) //you can set data in store scope
->setWebsiteIds(array(1)) //website ID the product is assigned to, as an array
->setAttributeSetId($value[17]) //ID of a attribute set named 'default'
->setTypeId($value[1]) //product type
->setCreatedAt(strtotime('now')) //product creation time
// ->setUpdatedAt(strtotime('now')) //product update time
->setSku($value[0]) //SKU
->setName($value[2]) //product name
->setWeight($value[6])
->setStatus(1) //product status (1 - enabled, 2 - disabled)
->setTaxClassId(0) //tax class (0 - none, 1 - default, 2 - taxable, 4 - shipping)
->setVisibility(Mage_Catalog_Model_Product_Visibility::VISIBILITY_BOTH) //catalog and search visibility
//->setManufacturer(28) //manufacturer id
//->setColor($value[15])
//->setSize($value[16])
->setNewsFromDate('') //product set as new from
->setNewsToDate('') //product set as new to
->setPrice($value[7]) //price in form 11.22
->setSpecialPrice('') //special price in form 11.22
->setSpecialFromDate('') //special price from (MM-DD-YYYY)
->setSpecialToDate('') //special price to (MM-DD-YYYY)
->setMetaTitle($value[8])
->setMetaKeyword($value[10])
->setMetaDescription($value[9])
->setDescription($value[4])
->setShortDescription($value[5]);
if(!empty($value[14])){
$galleryData = explode(',',$value[14]);
$configProduct->setMediaGallery (array('images'=>array (), 'values'=>array ()));
foreach($galleryData as $gallery_img) {
if ($gallery_img){
$configProduct->addImageToMediaGallery($gallery_img, array ('image','small_image','thumbnail'), false, false);
}
else{
$err = 1;
Mage::getSingleton('core/session')->addError($this->__('Image Path of '.$value[0].' Not Exist !!!'));
//$this->_redirect('musbury/index/index/');
}
}
}
$configProduct->setStockData(array(
'use_config_manage_stock' => 0, //'Use config settings' checkbox
'manage_stock' => 1, //manage stock
'min_sale_qty' => 1, //Minimum Qty Allowed in Shopping Cart
'max_sale_qty' => 2, //Maximum Qty Allowed in Shopping Cart
'is_in_stock' => 1, //Stock Availability
'qty' => $value[11] //qty
)
)
// $cat = $this->getCategoryNameById($value[3]);
->setCategoryIds($cat); //assign product to categories
$simpleProducts = Mage::getResourceModel('catalog/product_collection')
->addIdFilter($simpleProductArr)
->addAttributeToSelect('color')
->addAttributeToSelect('size')
->addAttributeToSelect('price');
$configProduct->setCanSaveConfigurableAttributes(true);
$configProduct->setCanSaveCustomOptions(true);
$configProduct->getTypeInstance()->setUsedProductAttributeIds(array($attribute_colorid,$attribute_sizeid)); //attribute ID of attribute 'color' in my store
$configurableAttributesData = $configProduct->getTypeInstance()->getConfigurableAttributesAsArray();
$configProduct->setCanSaveConfigurableAttributes(true);
$configProduct->setConfigurableAttributesData($configurableAttributesData);
$configurableProductsData = array();
foreach ($simpleProducts as $simple) {
$productData = array(
'label' => $simple->getAttributeText('color'),
'attribute_id' => $attribute_colorid,
'value_index' => (int) $simple->getColor(),
'is_percent' => 0,
'pricing_value' => $simple->getPrice()
);
$configurableProductsData[$simple->getId()] = $productData;
$configurableAttributesData[0]['values'][] = $productData;
$productData = array(
'label' => $simple->getAttributeText('size'),
'attribute_id' => $attribute_sizeid,
'value_index' => (int) $simple->getSize(),
'is_percent' => 0,
'pricing_value' => $simple->getPrice()
);
$configurableProductsData[$simple->getId()] = $productData;
$configurableAttributesData[1]['values'][] = $productData;
}
$configProduct->setConfigurableProductsData($configurableProductsData);
$configProduct->setConfigurableAttributesData($configurableAttributesData);
$configProduct->setCanSaveConfigurableAttributes(true);
Mage::log($configurableProductsData, null, 'configurableProductsData.log', true);
Mage::log($configurableAttributesData, null, 'configurableAttributesData.log', true);
$configProduct->save();
$confId = $configProduct->getId();
// saving the configurable option attribute price value
if($configProduct->getId()!='') {
$configurable = Mage::getModel('catalog/product')->load($confId);
$simpleProducts = Mage::getResourceModel('catalog/product_collection')
->addIdFilter($simpleProductArr)
->addAttributeToSelect('color')
->addAttributeToSelect('size')
->addAttributeToSelect('price');
$configurableProductsData = array();
$configurableAttributesData = $configurable->getTypeInstance()->getConfigurableAttributesAsArray();
foreach ($simpleProducts as $simple) {
$productData = array(
'label' => $simple->getAttributeText('color'),
'attribute_id' => $attribute_colorid,
'value_index' => (int) $simple->getColor(),
'is_percent' => 0,
'pricing_value' => $simple->getPrice()
);
$configurableProductsData[$simple->getId()] = $productData;
$configurableAttributesData[0]['values'][] = $productData;
$productData = array(
'label' => $simple->getAttributeText('size'),
'attribute_id' => $attribute_sizeid,
'value_index' => (int) $simple->getSize(),
'is_percent' => 0,
'pricing_value' => $simple->getPrice()
);
$configurableProductsData[$simple->getId()] = $productData;
$configurableAttributesData[1]['values'][] = $productData;
}
$configurable->setConfigurableProductsData($configurableProductsData);
$configurable->setConfigurableAttributesData($configurableAttributesData);
$configurable->setCanSaveConfigurableAttributes(true);
Mage::log($configurableProductsData, null, 'configurableProductsData.log', true);
Mage::log($configurableAttributesData, null, 'configurableAttributesData.log', true);
$configurable->save();
$simpleProductArr = array();
echo "SKU:".$value[0].' added sucessfully'."<br />";
}
} catch (Exception $e) {
$simpleProductArr = array();
Mage::log($e->getMessage());
echo "SKU:".$value[0].' added unsucessfully'."<br />";
}
}
}
}
Juhuuu 
